PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002250.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 257aa    MW: 28246.9 Da    PI: 4.7968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002250.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-1982132155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Itr_sc002250.1_g00006.1  82 PVYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 132
                              68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1482132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3283142IPR001471AP2/ERF domain
PROSITE profilePS5103222.77483140IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2183142IPR016177DNA-binding domain
SMARTSM003802.8E-3183146IPR001471AP2/ERF domain
CDDcd000189.24E-3384142No hitNo description
PRINTSPR003673.7E-98495IPR001471AP2/ERF domain
PRINTSPR003673.7E-9106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDMDMDIVGN YYSGNFLSAA AAASSFWSPE MGAVVSSPLS SSDTGSCSAT MKANLSDEEV  60
LLASNNPKKR AGRKKFRETR HPVYRGVRRR NSGKWVCEVR EPNKKSRIWL GTFPTAEMAA  120
RAHDVAAIAL RGRSACLNFA DSAWRLPIPA SADPKDIQKA AAEAAEAFRP VALPANQNQT  180
QRIILEEEEC NSSMKEEQVS TTNENVFFMD EEAFFDMPGL LADMAQALML PPPQCALVDR  240
TNDVELDADV SLWSFSI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4334570.0EF433457.1 Ipomoea batatas DRE-binding transcription factor swDREB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030036.12e-99PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ932e-78DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLB1NA691e-169B1NA69_IPOBA; DRE-binding transcription factor swDREB1
STRINGSolyc03g026270.1.12e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-74C-repeat-binding factor 4